command_files

             Example SNOMAN Command Files Currently Distributed
             ==================================================
 
Contact:  N. West, Oxford.
 
A number of command files (with the extension .CMD) are distributed 
with SNOMAN. Below is a list of their names and a brief description.
For more information look in the files themselves. There are two types:-

1)   RUN_*.CMD files are complete, ready to run, command files; SNOMAN 
     asks for no further input once it executes one of these files.  

2)   All other .CMD file, require further input.

As new .CMD files are added from time to time, check the directories themselves
for the latest list.

 File Name (*.CMD)                        Description
 -----------------                        -----------
 ALPHAS_NCD                    Generates and computes the pulse shapes of 1 MeV wall alphas
 
 ACTIVATE_MUONS                Enable muon and atmosphreric neutrino propagation in SNOMAN

 ANXX_CONFIGURE_FOR_PCA        Configure, create and use abnormal channel analysis.
 ANXX_CONFIGURE_FOR_NEUTRINO
 ANXX_CONFIGURE_FOR_N16
 RUN_CREATE_ANXX_BANKS
 ANXX_LOAD


 BOMB_NCD                      Example NCD pulse simulation

 CALIBRATION_AMBE              Generate isotropic neutrons to calibrate Am Be source

 CALIBRATION_16N               These files set up the MCPI bank and geometry
 CALIBRATION_252CF             for various calibration sources.
 CALIBRATION_8LI_GENERIC
 CALIBRATION_8LI_INST_BALL
 CALIBRATION_PTG

 DISABLE_FITTER_ANXX           Disable fitter sensitivity to ANXX.   

 ECA_READ                      Electronics calibration simulation.
 ECA_READ_ELEC_CALIB    
 ECA_WRITE    
 ECA_WRITE_ELEC_CALIB    

 GEN_208TL                     These files set up the MCPI bank for generating
 GEN_210TL                     different starting particles
 GEN_214BI
 GEN_56CO
 GEN_CC
 GEN_CC_H
 GEN_CL_N_GAMMA
 GEN_D_N_GAMMA
 GEN_ELECTRON_PAIR
 GEN_ES
 GEN_H_N_GAMMA
 GEN_LASERBALL
 GEN_LED_PSUP
 GEN_MONOENG_ELECTRON
 GEN_MONOENG_GAMMA
 GEN_MONOENG_NEUTRON
 GEN_MSW
 GEN_MUON_COSMICS
 GEN_NC_NEUTRON
 GEN_PHOTON_BOMB
 GEN_ROCK_GAMMAS


 GEOM_ACRYLIC_TILES            These files switch on various detector elements
 GEOM_AIR_FILL
 GEOM_BELLY_PLATE_ROPE
 GEOM_CHIME
 GEOM_NCD
 GEOM_PSUP
 GEOM_SCINT_OIL_1M
 GEOM_UMBIL_MAN_WEIGHT
 QU_3DPMT

 HARDWIRE_CCC_TUBE             This demonstrates how to map tube ttt to channel ccc.

 OVERLAY                       This file contains all the switches needed to overlay
                               data onto monte carlo.

 OCA_VARIATION                 Enable Variation in PMT, Acrylic Tile and Reflector.

 MPC_MAKE_TITLES               Multiphoton correction       
 MPC_MAKE_MC_TITLES
 MPC_MEASURE_RMS
 MPC_SELECT_TUBES

 PCA_GAIN                      This runs the PCA gain code
 PCA_WALK                      This runs the PCA walk code

 PMT_SIMULATION                This file contains all the switches needed to
                               control the PMT simulation

 READ_MINISNO_128_TITLES       These files read various titles banks
 READ_MINISNO_90_TITLES
 READ_NEUTRON_TITLES           
 READ_SNO_TITLES
 READ_UNIVERSAL_TITLES
 RSP_LOAD_TITLES

 LOAD_FTK_D2O_SETTINGS         FTK configuration
 LOAD_FTK_SALT_SETTINGS

 BAM_MEDIA_QOCA_MAR16          RSP configuration
 MEDIA_QOCA_JAN22
 MEDIA_QOCA_APR17
 RSP_CONFIGURE
 RSP_LOAD_OPTICS_TITLES
 RSP_SET_COLL_EFF

 The run_*.cmd files are, for the most part, complete ready to run command files
 For example running SNOMAN and typing:-

    @run_e_minus

 runs 100 5Mev e- in the D2O.

 The tool:-

    $SNO_TOOLS/run_standard_jobs.scr

 runs most of the run_*.cmd files - see that file for the list of .cmd files it excludes.

 RUN
 RUN_ANALYSE_FULL_FILE
 RUN_ANALYSE_WITH_USR
 RUN_ANALYSE_ZDAB_FILE         
 RUN_B8_4
 RUN_CALIBRATION
 RUN_CALI_252CF    
 RUN_CALI_8LI    
 RUN_CAVITY_GAMMAS
 RUN_CC
 RUN_CC_SNOVA    
 RUN_COSMICS  
 RUN_COSMIC_MUONS
 RUN_E_MINUS
 RUN_ES
 RUN_EXP_UMBIL
 RUN_FTK_ENERGY_FITTER
 RUN_GAMMA    
 RUN_GRID_FITTER    
 RUN_LASERBALL
 RUN_LED_PSUP
 RUN_MXF
 RUN_MCPL
 RUN_MSW
 RUN_MUON
 RUN_MUON_FITTERS
 RUN_NC
 RUN_NET_CLASSIFIER
 RUN_NEUTRON
 RUN_PATH_FITTER
 RUN_PICK_AND_MIX
 RUN_PMT_BETA_GAMMA
 RUN_QRC
 RUN_QRC_PCA
 RUN_RSP
 RUN_SCINT_5MEV 
 RUN_SNODB 
 RUN_SNODB_OXFORD 
 RUN_SPECIFIC_RUN
 RUN_SPS
 RUN_TEST_GEOMETRY
 RUN_TEST_GEOMETRY_2
 RUN_TEST_HADRON_CODE
 RUN_WRITE_FULL_FILE
 RUN_WRITE_PRUNED_FILE
 RUN_WRITE_ZDAB_FILE
 RUN_WITHOUT_SNODB 

 BURST_CUT                   This file shows how to use the burst cut in particular and the raa in general.
 RUN_FPS                     This file shows how to run FPS: First Pass run Selection.
 RUN_MASTER                  To run FPS: First Pass run Selection, using separate command files to define inputs.
 FPS_DQXX_INPUT              This file shows how to input DQXX banks for FPS
 FPS_INPUT                   This file shows how to declare input zdab and output text file for FPS.
 RUN_LSP                     This file shows how to run LSP: Livetime Summary.
     



 SELECT_2_09_PMT_RESPONSE    This switches on 2.09 PMT response functions
 SELECT_MINISNO              This file sets values needed to model the Seattle tank

 SPS_INPUT                        
 The sys_xxx.cmd and, where necessary, sys_xxx.dat files, where xxx refers to
 some particular configuration of the detector, provide standard sets for people
 want to check for systematics. 

 SYS_TUBE_ASYM               Reduce the efficiency of the tubes near top of detector

 TEST_READ_NCD               Test unpacking NCD ZDAB data.
 TEST_SDB_MULTI_FILE         Test SDB multi-file support
 TEST_UCL_MCONLY             Tests UCL: For comparison with the results of the other cmd files.
 TEST_UCL_CAL                Tests UCL: This uncalibrates then calibrates.
 TEST_UCL_ZDAB               Tests UCL: This uncalibrates and makes a zdab.
 TEST_ZDAB_CAL               Tests UCL: This reads the zdab and calibrates.